PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G023500.1
Common NameB456_007G023500, bHLH110D, LOC105801914
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 625aa    MW: 69891.8 Da    PI: 5.453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G023500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.2e-15422470255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++h   ErrRR++iN+++  L++l+P++      K +K++iL  ++eY+++L+
  Gorai.007G023500.1 422 CKSHVLSERRRREKINERLMILKSLVPTN-----SKADKVSILDDTIEYLQDLE 470
                         68999***********************8.....7****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5016199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.187420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-12422470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17423484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-15423474No hitNo description
Gene3DG3DSA:4.10.280.106.8E-17424486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MATTGVQNQE KVPMNLKQQF ALAVRNIQWS YGIFWSISAK QPGVLEWGDG YYNGDIKTRK  60
TVQSFEPKAD DQLGLQRSEQ LRELFESLSA GETSPHTKRP SVALSPEDLT ATEWYYLVCM  120
SFVFNIDQGL PGRTLSIGQP IWLCNAQYAD SKVFSRSLVA KSASIQTVVC FPYAGGVIEL  180
GVTDLVLKDL GLIHRVKSLL LDAPETITGN INDVACPGLG PNEIESELSP FLGCEQLERG  240
SPNEISDGFE PNQPAEDPFV NGGASQVQSW QFMDDHHSLN TSDCISQTFS DHEDVVPLCQ  300
GENDNDNDFR DVEECDRINR AAFDPISDDM HYRTVVSVLL KSSHQFILGP HFGNSNKESG  360
FISWKMNSSV KYRKAKVEIP QKLLKKMLFE VPRMHDKGLL KSPQGGDGVG DAVWRPEADE  420
LCKSHVLSER RRREKINERL MILKSLVPTN SKADKVSILD DTIEYLQDLE RRVEELECCR  480
ELTESETKTK QKHHRDRAER TSSNKVTNGN KSASSNKRKA YDIEETKQDI DHVASKDGST  540
ENLTVSTNNK DLTIEFKCRW RDGILFEIMD ALSVLDLDCH SVQSSTIEGI LSVTIKSKYK  600
GSSVAKPGTI KQALLQKVQS LTFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A8e-152920024192Transcription factor MYC3
4rs9_A8e-152920024192Transcription factor MYC3
4rqw_B8e-152920024192Transcription factor MYC3
4rqw_A8e-152920024192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428433ERRRRE
2429434RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362790.0AF336279.1 Gossypium hirsutum GHDEL61 (ghdel61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488720.10.0PREDICTED: transcription factor EGL1-like isoform X1
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLA0A0D2T7P40.0A0A0D2T7P4_G
STRINGPOPTR_0001s09450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-180bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yan Q, et al.
    The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.
    PLoS ONE, 2015. 10(5): p. e0126558
    [PMID:25992947]